PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G152400.1
Common NameB456_004G152400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 99aa    MW: 11198.9 Da    PI: 10.3868
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G152400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH215.8e-077095630
                        HHHHHHHHHHHHHHHHHHHCTSCC.C CS
                 HLH  6 nerErrRRdriNsafeeLrellPk.a 30
                         ++Er RR +i +++ +L+el+P+ +
  Gorai.004G152400.1 70 RIAERVRRTQISDRIRKLQELVPNmD 95
                        579********************955 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.3886498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-66796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-56995IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MDVSPSIKRA SELDTQFPLT KFHSQLKGEP SDQISGGISN LIDVDMEKLL EDSVPCRVRT  60
KRGCATHPRR IAERVRRTQI SDRIRKLQEL VPNMDKAR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475095.16e-66PREDICTED: transcription factor bHLH80-like, partial
SwissprotQ9C8P82e-37BH080_ARATH; Transcription factor bHLH80
SwissprotQ9M0R02e-37BH081_ARATH; Transcription factor bHLH81
TrEMBLA0A0D2R5731e-66A0A0D2R573_G
STRINGBra036760.1-P4e-37(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51042551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.11e-38bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]